Organised by: TÜBİTAK ULAKBİM and ITU-UHeM
Date:14 October 2025
Event Type: Training
Format: Online
Topic: De novo peptide design with RFdiffusion a generative model
Overview: This course aims to demonstrate how RFdiffusion can be used to generate peptides binding to target proteins.
Agenda:
- Introduction on RFdiffusion method
- How to install RFdiffusion on UHEM
- Running RFdiffusion on sample proteins
- Interpretation of the results
Skill Level: Intermediate & Advanced
Language: Turkish
Duration: 2 Hours
Target Audience: Industry and Academia
Tools, libraries, frameworks used: RFdiffusion library
Prerequisite(s): Basic knowledge in protein structure and function, familiarity with HPC and linux systems, prior experience with protein visualization tools such as Pymol, VMD, Chimera etc.
Learning Objectives:
- Understanding how RFdiffusion works
- Being able to generate peptides on a target protein
- Learning capabilities and limitations of RFdiffusion method
Instructor: Doç. Dr. Sefer BADAY – ITU
Contact: ncc@ulakbim.gov.tr
-------
Disclaimer
Sadece EuroHPC JU katılımcı ülkelerinde (Türkiye gibi) yaşayan ve çalışan katılımcılar etkinliğe katılım sağlayabilir.( https://eurohpc-ju.europa.eu/about/discover-eurohpc-ju_en)
Yalnızca resmi e-posta adresleri (çalıştığınız kurum e-posta adresi veya edu uzantılı üniversite e-posta adresleri) kayıt için kabul edilmektedir; kişisel veya jenerik e-posta adresleri (gmail, hotmail, yahoo gibi) kabul edilmemektedir.
------
Bizi X ve LinkedIn hesaplarımızdan takip edebilirsiniz. YouTube kanalımıza abone olmayı unutmayın!
- Twitter: https://twitter.com/EuroCC_Turkey
- LinkedIN: https://www.linkedin.com/company/eurocc-turkey
- YouTube: https://www.youtube.com/c/EuroCCTurkey
Acknowledgments
This event was supported by the EuroCC 2 and EuroCC4SEE projects, which received funding from the European High-Performance Computing Joint Undertaking (JU) under grant agreements No. 101101903 and No. 101191697, respectively. The JU receives support from the Digital Europe Programme and Germany, Bulgaria, Austria, Croatia, Cyprus, Czech Republic, Denmark, Estonia, Finland, Greece, Hungary, Ireland, Italy, Lithuania, Latvia, Poland, Portugal, Romania, Slovenia, Spain, Sweden, France, Netherlands, Belgium, Luxembourg, Slovakia, Norway, Türkiye, Republic of North Macedonia, Iceland, Montenegro, Serbia.
