Name: Dialogues in the Midst: Accessing Long Time and Large Length Scales: Coarse-Grained Simulations
Start: 2026-03-27T09:30:00+03:00
End: 2026-03-27T16:00:00+03:00
Location: Sabancı University Altunizade Digital Campus, Istanbul

Dialogues in the Midst: Accessing Long Time and Large Length Scales: Coarse-Grained Simulations

27 Mart 2026 Cuma - 09:30

23 Mart 2026 Pazartesi
24 Mart 2026 Salı
25 Mart 2026 Çarşamba
26 Mart 2026 Perşembe
27 Mart 2026 Cuma

09:30 Registration
Registration
09:30 - 10:00
Room: Classrooms G08-G09
10:00 From Atomistic to Coarse-Grained Modeling: Concepts and Motivation - Ozge Sensoy
From Atomistic to Coarse-Grained Modeling: Concepts and Motivation
- Ozge Sensoy
10:00 - 10:45
Room: Classrooms G08-G09
10:45 Introduction to Martini Force Field and Mapping Strategies - Ozge Sensoy
Introduction to Martini Force Field and Mapping Strategies
- Ozge Sensoy
10:45 - 11:15
Room: Classrooms G08-G09
11:15 Coffee Break
Coffee Break
11:15 - 11:30
Room: Classrooms G08-G09
11:30 GROMACS Workflow for Coarse-Grained Simulations - Ozge Sensoy
GROMACS Workflow for Coarse-Grained Simulations
- Ozge Sensoy
11:30 - 12:15
Room: Classrooms G08-G09
12:15 Introduction to Ligand Parameterization in Martini - Ozge Sensoy
Introduction to Ligand Parameterization in Martini
- Ozge Sensoy
12:15 - 12:30
Room: Classrooms G08-G09
12:30 Lunch Break
Lunch Break
12:30 - 13:30
13:30 Hands-on I: System Setup and Running CG Simulations in GROMACS - Iremnur Yalcin (İstanbul Medipol Üniversitesi) Hanife Pekel (İstanbul Medipol Üniversitesi) Dima Amairy (İstanbul Medipol Üniversitesi) Ozge Sensoy Zeynep Nur Cinviz (İstanbul Medipol Üniversitesi )
Hands-on I: System Setup and Running CG Simulations in GROMACS
- Iremnur Yalcin (İstanbul Medipol Üniversitesi)
- Hanife Pekel (İstanbul Medipol Üniversitesi)
- Dima Amairy (İstanbul Medipol Üniversitesi)
- Ozge Sensoy
- Zeynep Nur Cinviz (İstanbul Medipol Üniversitesi )
13:30 - 14:30
Room: Classrooms G08-G09
14:30 Coffee Break
Coffee Break
14:30 - 14:45
Room: Classrooms G08-G09
14:45 Hands-on II: Trajectory Analysis and Dynamics Evaluation - Iremnur Yalcin (İstanbul Medipol Üniversitesi) Ozge Sensoy Dima Amairy (İstanbul Medipol Üniversitesi) Hanife Pekel (İstanbul Medipol Üniversitesi) Zeynep Nur Cinviz (İstanbul Medipol Üniversitesi )
Hands-on II: Trajectory Analysis and Dynamics Evaluation
- Iremnur Yalcin (İstanbul Medipol Üniversitesi)
- Ozge Sensoy
- Dima Amairy (İstanbul Medipol Üniversitesi)
- Hanife Pekel (İstanbul Medipol Üniversitesi)
- Zeynep Nur Cinviz (İstanbul Medipol Üniversitesi )
14:45 - 15:30
Room: Classrooms G08-G09
15:30 Backmapping to Atomistic Resolution and Discussion - Ozge Sensoy Zeynep Nur Cinviz (İstanbul Medipol Üniversitesi ) Iremnur Yalcin (İstanbul Medipol Üniversitesi) Hanife Pekel (İstanbul Medipol Üniversitesi) Dima Amairy (İstanbul Medipol Üniversitesi)
Backmapping to Atomistic Resolution and Discussion
- Ozge Sensoy
- Zeynep Nur Cinviz (İstanbul Medipol Üniversitesi )
- Iremnur Yalcin (İstanbul Medipol Üniversitesi)
- Hanife Pekel (İstanbul Medipol Üniversitesi)
- Dima Amairy (İstanbul Medipol Üniversitesi)
15:30 - 16:00
Room: Classrooms G08-G09

Choose timezone