Dialogues in the Midst: Accessing Long Time and Large Length Scales: Coarse-Grained Simulations
27 Mart 2026 Cuma -
09:30
23 Mart 2026 Pazartesi
24 Mart 2026 Salı
25 Mart 2026 Çarşamba
26 Mart 2026 Perşembe
27 Mart 2026 Cuma
09:30
Registration
Registration
09:30 - 10:00
Room: Classrooms G08-G09
10:00
From Atomistic to Coarse-Grained Modeling: Concepts and Motivation
-
Ozge Sensoy
From Atomistic to Coarse-Grained Modeling: Concepts and Motivation
Ozge Sensoy
10:00 - 10:45
Room: Classrooms G08-G09
10:45
Introduction to Martini Force Field and Mapping Strategies
-
Ozge Sensoy
Introduction to Martini Force Field and Mapping Strategies
Ozge Sensoy
10:45 - 11:15
Room: Classrooms G08-G09
11:15
Coffee Break
Coffee Break
11:15 - 11:30
Room: Classrooms G08-G09
11:30
GROMACS Workflow for Coarse-Grained Simulations
-
Ozge Sensoy
GROMACS Workflow for Coarse-Grained Simulations
Ozge Sensoy
11:30 - 12:15
Room: Classrooms G08-G09
12:15
Introduction to Ligand Parameterization in Martini
-
Ozge Sensoy
Introduction to Ligand Parameterization in Martini
Ozge Sensoy
12:15 - 12:30
Room: Classrooms G08-G09
12:30
Lunch Break
Lunch Break
12:30 - 13:30
13:30
Hands-on I: System Setup and Running CG Simulations in GROMACS
-
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Ozge Sensoy
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
Hands-on I: System Setup and Running CG Simulations in GROMACS
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Ozge Sensoy
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
13:30 - 14:30
Room: Classrooms G08-G09
14:30
Coffee Break
Coffee Break
14:30 - 14:45
Room: Classrooms G08-G09
14:45
Hands-on II: Trajectory Analysis and Dynamics Evaluation
-
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Ozge Sensoy
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
Hands-on II: Trajectory Analysis and Dynamics Evaluation
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Ozge Sensoy
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
14:45 - 15:30
Room: Classrooms G08-G09
15:30
Backmapping to Atomistic Resolution and Discussion
-
Ozge Sensoy
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Backmapping to Atomistic Resolution and Discussion
Ozge Sensoy
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
15:30 - 16:00
Room: Classrooms G08-G09