Dialogues in the Midst: Accessing Long Time and Large Length Scales: Coarse-Grained Simulations
Friday, March 27, 2026 -
9:30 AM
Monday, March 23, 2026
Tuesday, March 24, 2026
Wednesday, March 25, 2026
Thursday, March 26, 2026
Friday, March 27, 2026
9:30 AM
Registration
Registration
9:30 AM - 10:00 AM
Room: Classrooms G08-G09
10:00 AM
From Atomistic to Coarse-Grained Modeling: Concepts and Motivation
-
Ozge Sensoy
From Atomistic to Coarse-Grained Modeling: Concepts and Motivation
Ozge Sensoy
10:00 AM - 10:45 AM
Room: Classrooms G08-G09
10:45 AM
Introduction to Martini Force Field and Mapping Strategies
-
Ozge Sensoy
Introduction to Martini Force Field and Mapping Strategies
Ozge Sensoy
10:45 AM - 11:15 AM
Room: Classrooms G08-G09
11:15 AM
Coffee Break
Coffee Break
11:15 AM - 11:30 AM
Room: Classrooms G08-G09
11:30 AM
GROMACS Workflow for Coarse-Grained Simulations
-
Ozge Sensoy
GROMACS Workflow for Coarse-Grained Simulations
Ozge Sensoy
11:30 AM - 12:15 PM
Room: Classrooms G08-G09
12:15 PM
Introduction to Ligand Parameterization in Martini
-
Ozge Sensoy
Introduction to Ligand Parameterization in Martini
Ozge Sensoy
12:15 PM - 12:30 PM
Room: Classrooms G08-G09
12:30 PM
Lunch Break
Lunch Break
12:30 PM - 1:30 PM
1:30 PM
Hands-on I: System Setup and Running CG Simulations in GROMACS
-
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Ozge Sensoy
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
Hands-on I: System Setup and Running CG Simulations in GROMACS
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Ozge Sensoy
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
1:30 PM - 2:30 PM
Room: Classrooms G08-G09
2:30 PM
Coffee Break
Coffee Break
2:30 PM - 2:45 PM
Room: Classrooms G08-G09
2:45 PM
Hands-on II: Trajectory Analysis and Dynamics Evaluation
-
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Ozge Sensoy
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
Hands-on II: Trajectory Analysis and Dynamics Evaluation
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Ozge Sensoy
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
2:45 PM - 3:30 PM
Room: Classrooms G08-G09
3:30 PM
Backmapping to Atomistic Resolution and Discussion
-
Ozge Sensoy
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
Backmapping to Atomistic Resolution and Discussion
Ozge Sensoy
Zeynep Nur Cinviz
(
İstanbul Medipol Üniversitesi
)
Iremnur Yalcin
(
İstanbul Medipol Üniversitesi
)
Hanife Pekel
(
İstanbul Medipol Üniversitesi
)
Dima Amairy
(
İstanbul Medipol Üniversitesi
)
3:30 PM - 4:00 PM
Room: Classrooms G08-G09